featureinfo.h

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#ifndef TRAPPER_DATA_INFO_H
#define TRAPPER_DATA_INFO_H

#include "trappertypes.h"
#include <string>

//Fwd stuff...
class FeatureData;
class SpatialFeatureData;
class DnpData;
class DnaStrData;
class ChromatData;
class QualityData;
class TagData;


/** \brief Base class for displaying info about reads and features.
   
*/

class FeatureInfo
{
public:
  FeatureInfo( SpatialFeatureData* data) : m_data(data) {}
  virtual ~FeatureInfo() {}
  std::string getPosInfo( TR_DNA pos );
  std::string getRangeInfo( TR_DNA begin, TR_DNA end );
  
protected:
  SpatialFeatureData* m_data;
  
  virtual std::string myInfoPos( TR_DNA pos );
  virtual std::string myInfoRange( TR_DNA begin, TR_DNA end );
  
};

//DnpData
class DnpInfo : public FeatureInfo
{
public:
  DnpInfo( SpatialFeatureData* data ) : FeatureInfo(data) {}

  std::string myInfoPos( TR_DNA pos );
  std::string myInfoRange( TR_DNA begin, TR_DNA end );
  
private:
  DnpData* dnpData();
  
};


//DnaStrData
class DnaStrInfo : public FeatureInfo
{
public:
  DnaStrInfo( SpatialFeatureData* data ) : FeatureInfo(data) {}

  std::string myInfoPos( TR_DNA pos );
  
private:
  DnaStrData* dnaStrData();
  
};

//QualityData
class QualityInfo : public FeatureInfo
{
public:
  QualityInfo( SpatialFeatureData* data ) : FeatureInfo(data) {}

  std::string myInfoPos( TR_DNA pos );
  
private:
  QualityData* qualityData();
  
};

//TagData
class TagInfo : public FeatureInfo
{
public:
  TagInfo( SpatialFeatureData* data ) : FeatureInfo(data) {}

  std::string myInfoPos( TR_DNA pos );

  
private:
  TagData* tagData();
  
};


#endif //TRAPPER_DATA_INFO_H

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