SpatialFeatureData Class Reference

#include <featuredata.h>

Inheritance diagram for SpatialFeatureData:

[legend]Collaboration diagram for SpatialFeatureData:

[legend]List of all members.

Public Member Functions
	SpatialFeatureData (db_recno_t readRec=0, TR_DNA start=0, TR_DNA end=0)
virtual	~SpatialFeatureData ()
TR_DNA	startPos ()
TR_DNA	endPos ()
void	setStartPos (TR_DNA start)
void	setEndPos (TR_DNA end)
virtual void	readStream (QDataStream &str)
virtual void	writeStream (QDataStream &str)
virtual void	readAttributes (const QXmlAttributes &attr)
virtual void	writeXml (ostream &stream)
virtual void	print_debug_info ()
Protected Member Functions
virtual FeatureInfo *	makeInfo ()
Protected Attributes
TR_DNA	startPos_
TR_DNA	endPos_

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Detailed Description

Definition at line 81 of file featuredata.h.

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Constructor & Destructor Documentation

SpatialFeatureData::SpatialFeatureData	(	db_recno_t	readRec = 0,
		TR_DNA	start = 0,
		TR_DNA	end = 0
	)

Definition at line 129 of file featuredata.cpp.

References endPos_, and startPos_.

                                                                                    : FeatureData(readRec)
{
    startPos_ = start;
    endPos_ = end;
}

SpatialFeatureData::~SpatialFeatureData

(

)

[virtual]

Definition at line 135 of file featuredata.cpp.

{
}

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Member Function Documentation

TR_DNA SpatialFeatureData::startPos

(

)

[inline]

Reimplemented from FeatureData.

Definition at line 86 of file featuredata.h.

References startPos_.

Referenced by FeatureGui::paint().

{ return startPos_; }

TR_DNA SpatialFeatureData::endPos

(

)

[inline]

Reimplemented from FeatureData.

Definition at line 87 of file featuredata.h.

References endPos_.

Referenced by FeatureInfo::getPosInfo(), FeatureInfo::getRangeInfo(), and FeatureGui::paint().

{ return endPos_; }

void SpatialFeatureData::setStartPos

(

TR_DNA

start

)

[inline]

Reimplemented from FeatureData.

Definition at line 88 of file featuredata.h.

References startPos_.

{ startPos_ = start; }

void SpatialFeatureData::setEndPos

(

TR_DNA

end

)

[inline]

Reimplemented from FeatureData.

Definition at line 89 of file featuredata.h.

References endPos_.

{ endPos_ = end; }

void SpatialFeatureData::readStream

(

QDataStream &

str

)

[virtual]

Loads the state of this object from a byte stream. Or in other words reads and unserializes a byte stream to set the values of this class object. This method is used for loading a GeneralData object from Berkeley Db.

Reimplemented from FeatureData.

Reimplemented in DnpData, DnaStrData, ChromatData, QualityData, TagData, DnpData, DnaStrData, ChromatData, QualityData, and TagData.

Definition at line 139 of file featuredata.cpp.

References endPos_, FeatureData::readStream(), and startPos_.

Referenced by TagData::readStream(), ChromatData::readStream(), QualityData::readStream(), DnaStrData::readStream(), and DnpData::readStream().

{
  FeatureData::readStream(stream);
  stream>>startPos_;
  stream>>endPos_;
}

void SpatialFeatureData::writeStream

(

QDataStream &

str

)

[virtual]

Saves the state of this object to a byte stream. Or in other words serializes and writes the internal data held in this class object to a byte stream. This method is used for storing a GeneralData object into Berkeley Db.

Reimplemented from FeatureData.

Reimplemented in DnpData, DnaStrData, ChromatData, QualityData, TagData, DnpData, DnaStrData, ChromatData, QualityData, and TagData.

Definition at line 146 of file featuredata.cpp.

References endPos_, startPos_, and FeatureData::writeStream().

Referenced by TagData::writeStream(), ChromatData::writeStream(), QualityData::writeStream(), DnaStrData::writeStream(), and DnpData::writeStream().

{
  FeatureData::writeStream(stream);
  stream<<startPos_;
  stream<<endPos_;  
}

void SpatialFeatureData::readAttributes

(

const QXmlAttributes &

attr

)

[virtual]

Loads the state of this object from QXmlAttributes.This method is used for importing.

Reimplemented from FeatureData.

Reimplemented in DnpData, DnaStrData, ChromatData, QualityData, TagData, DnpData, DnaStrData, ChromatData, QualityData, and TagData.

Definition at line 153 of file featuredata.cpp.

References endPos_, FeatureData::readAttributes(), startPos_, and QXmlAttributes::value().

Referenced by TagData::readAttributes(), ChromatData::readAttributes(), QualityData::readAttributes(), DnaStrData::readAttributes(), and DnpData::readAttributes().

{
  FeatureData::readAttributes(attr);
  if ( attr.value("startPos") != "" ) {
    QString startPosStr = attr.value("startPos");
    long startPosLong = startPosStr.toLong();
    // is long the same thing as Q_INT64 ?
    startPos_ = startPosLong;
  }
  if ( attr.value("endPos") != "" ) {  
    QString endPosStr = attr.value("endPos");
    ulong endPosLong = endPosStr.toLong();
    endPos_ = endPosLong;
  }
}

void SpatialFeatureData::writeXml

(

ostream &

stream

)

[virtual]

Reimplemented from FeatureData.

Reimplemented in DnpData, DnaStrData, ChromatData, QualityData, TagData, DnpData, DnaStrData, ChromatData, QualityData, and TagData.

Definition at line 168 of file featuredata.cpp.

References endPos_, startPos_, and FeatureData::writeXml().

Referenced by TagData::writeXml(), ChromatData::writeXml(), QualityData::writeXml(), DnaStrData::writeXml(), and DnpData::writeXml().

{
  FeatureData::writeXml(stream);
  stream<<"startPos=\""<<startPos_<<"\" "
        <<"endPos=\""<<endPos_<<"\"";
}

void SpatialFeatureData::print_debug_info

(

)

[virtual]

Prints some info for debugging, this should be removed in release version!

Reimplemented from FeatureData.

Definition at line 175 of file featuredata.cpp.

References endPos_, FeatureData::print_debug_info(), and startPos_.

{
  FeatureData::print_debug_info();
  cerr<<"startPos: "<<startPos_<<endl;
  cerr<<"endPos: "<<endPos_<<endl;
}

FeatureInfo * SpatialFeatureData::makeInfo

(

)

[protected, virtual]

Implements FeatureData.

Reimplemented in DnpData, DnaStrData, QualityData, TagData, DnpData, DnaStrData, QualityData, and TagData.

Definition at line 182 of file featuredata.cpp.

{
  return new FeatureInfo(this);
}

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Member Data Documentation

TR_DNA SpatialFeatureData::startPos_ [protected]

Definition at line 102 of file featuredata.h.

Referenced by print_debug_info(), readAttributes(), readStream(), setStartPos(), SpatialFeatureData(), startPos(), writeStream(), and writeXml().

TR_DNA SpatialFeatureData::endPos_ [protected]

Definition at line 103 of file featuredata.h.

Referenced by endPos(), print_debug_info(), readAttributes(), readStream(), setEndPos(), SpatialFeatureData(), writeStream(), and writeXml().

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The documentation for this class was generated from the following files:

• featuredata.h
• featuredata.cpp
• spatialfeaturedata.cc

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