DnpInfo Class Reference

#include <featureinfo.h>

Inheritance diagram for DnpInfo:

[legend]Collaboration diagram for DnpInfo:

[legend]List of all members.

Public Member Functions
	DnpInfo (SpatialFeatureData *data)
std::string	myInfoPos (TR_DNA pos)
std::string	myInfoRange (TR_DNA begin, TR_DNA end)
Private Member Functions
DnpData *	dnpData ()

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Detailed Description

Definition at line 38 of file featureinfo.h.

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Constructor & Destructor Documentation

DnpInfo::DnpInfo

(

SpatialFeatureData *

data

)

[inline]

Definition at line 41 of file featureinfo.h.

: FeatureInfo(data) {}

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Member Function Documentation

std::string DnpInfo::myInfoPos

(

TR_DNA

pos

)

[virtual]

Reimplemented from FeatureInfo.

Definition at line 33 of file featureinfo.cc.

References dnpData(), and DnpData::get_dnpID().

{
  assert( pos == dnpData()->startPos() );
  assert( pos == dnpData()->endPos() );
  
  ostringstream os;
  
  os<<"SNP ID: "<<dnpData()->get_dnpID();
  
  return os.str();
}

std::string DnpInfo::myInfoRange	(	TR_DNA	begin,
		TR_DNA	end
	)			[virtual]

Reimplemented from FeatureInfo.

Definition at line 45 of file featureinfo.cc.

References dnpData(), DnpData::get_dnpID(), and FeatureData::startPos().

{
  //Sanity check
  assert( dnpData()->startPos() == dnpData()->endPos() );
  ostringstream os;
  os.str("");
  if ( dnpData()->startPos() >= begin && dnpData()->startPos() <= end) {
    os<<"SNP ID: "<<dnpData()->get_dnpID()<<" at pos "<<dnpData()->startPos();

  }
  
  return os.str();
}

DnpData * DnpInfo::dnpData

(

)

[private]

Definition at line 59 of file featureinfo.cc.

References FeatureInfo::m_data.

Referenced by myInfoPos(), and myInfoRange().

{
    return dynamic_cast<DnpData *>( m_data );
}

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The documentation for this class was generated from the following files:

• featureinfo.h
• featureinfo.cc

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