QualityData Class Reference

Quality values of the meassurements/predicted bases. More...

#include <featuredata.h>

Inheritance diagram for QualityData:

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Collaboration diagram for QualityData:

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List of all members.

Public Member Functions

 QualityData ()
 QualityData (db_recno_t readRecno, TR_DNA startPos, TR_DNA endPos)
std::string uniqueName ()
virtual ~QualityData ()
int quality (int pos)
void readStream (QDataStream &str)
void writeStream (QDataStream &str)
void writeDom (QDomElement &elem)
void readDom (QDomElement &elem)
void readAttributes (const QXmlAttributes &attr)
void writeXml (ostream &stream)
 QualityData ()
 QualityData (db_recno_t readRecno, TR_DNA startPos, TR_DNA endPos)
std::string uniqueName ()
virtual ~QualityData ()
int quality (int pos)
void readStream (QDataStream &str)
void writeStream (QDataStream &str)
void writeDom (QDomElement &elem)
void readDom (QDomElement &elem)
void readAttributes (const QXmlAttributes &attr)
void writeXml (ostream &stream)

Public Attributes

TrapperVector< Q_UINT32 > qualityVector
TrapperVector< Q_UINT32 > qualityVector

Protected Member Functions

FeatureGui * makeGui ()
FeatureInfo * makeInfo ()
FeatureGui * makeGui ()
FeatureInfo * makeInfo ()

Detailed Description

Quality values of the meassurements/predicted bases.

Definition at line 193 of file featuredata.h.

Constructor & Destructor Documentation

QualityData::QualityData (  )  [inline]

Definition at line 196 of file featuredata.h.

00196                 : SpatialFeatureData()
00197   {
00198     
00199   }

QualityData::QualityData ( db_recno_t  readRecno,
TR_DNA  startPos,
TR_DNA  endPos 
)

Definition at line 467 of file featuredata.cpp.

00467                                                                              :
00468   SpatialFeatureData( readRecno, startPos, endPos )
00469 {}

virtual QualityData::~QualityData (  )  [inline, virtual]

Definition at line 205 of file featuredata.h.

00206   {}

QualityData::QualityData (  )  [inline]

Definition at line 177 of file spatialfeaturedata.h.

00177                 : FeatureData()
00178   {
00179     
00180   }

QualityData::QualityData ( db_recno_t  readRecno,
TR_DNA  startPos,
TR_DNA  endPos 
)

virtual QualityData::~QualityData (  )  [inline, virtual]

Definition at line 186 of file spatialfeaturedata.h.

00187   {}

Member Function Documentation

std::string QualityData::uniqueName (  )  [inline, virtual]

Specifies a name that uniquely should identify this class. It will be used for lookups in the GeneralMaker class.

Implements GeneralData.

Definition at line 201 of file featuredata.h.

00202   {
00203     return std::string("QualityData");
00204   }

int QualityData::quality ( int  pos  )  [inline]

Definition at line 208 of file featuredata.h.

References qualityVector, and TrapperVector< T >::stlVector().

00208 { return qualityVector.stlVector()[pos]; }

void QualityData::readStream ( QDataStream &  str  )  [virtual]

Loads the state of this object from a byte stream. Or in other words reads and unserializes a byte stream to set the values of this class object. This method is used for loading a GeneralData object from Berkeley Db.

Reimplemented from FeatureData.

Definition at line 307 of file featuredata.cpp.

References qualityVector, and SpatialFeatureData::readStream().

00308 {
00309     SpatialFeatureData::readStream( stream );
00310     stream >> qualityVector;
00311 }

void QualityData::writeStream ( QDataStream &  str  )  [virtual]

Saves the state of this object to a byte stream. Or in other words serializes and writes the internal data held in this class object to a byte stream. This method is used for storing a GeneralData object into Berkeley Db.

Reimplemented from FeatureData.

Definition at line 313 of file featuredata.cpp.

References qualityVector, and SpatialFeatureData::writeStream().

00314 {
00315     SpatialFeatureData::writeStream( stream );
00316     stream << qualityVector;
00317 }

void QualityData::writeDom ( QDomElement &  elem  )  [virtual]

Saves the state of this object to a dom tree. Or in other words writes out the internal data held in this class to a dom tree underneath the QDomElement elem. This method is used for exporting.

Reimplemented from GeneralData.

Definition at line 319 of file featuredata.cpp.

References qualityVector, TrapperVector< T >::writeDom(), and GeneralData::writeDom().

00320 {
00321     SpatialFeatureData::writeDom( elem );
00322     qualityVector.writeDom( elem );
00323 }

void QualityData::readDom ( QDomElement &  elem  )  [virtual]

Loads the state of this object from a dom tree. Or in other words reads in the values of the data members of this class from a dom tree underneath the QDomElement elem. This method is used for importing.

Reimplemented from GeneralData.

Definition at line 325 of file featuredata.cpp.

References qualityVector, TrapperVector< T >::readDom(), and GeneralData::readDom().

00326 {
00327     SpatialFeatureData::readDom( elem );
00328     qualityVector.readDom( elem );
00329 }

void QualityData::readAttributes ( const QXmlAttributes &  attr  )  [virtual]

Loads the state of this object from QXmlAttributes.This method is used for importing.

Reimplemented from FeatureData.

Definition at line 331 of file featuredata.cpp.

References qualityVector, TrapperVector< T >::readAttributes(), and SpatialFeatureData::readAttributes().

Referenced by MacsimParser::endElement().

00332 {
00333     SpatialFeatureData::readAttributes(attr);
00334     qualityVector.readAttributes(attr);
00335 }

void QualityData::writeXml ( ostream &  stream  )  [virtual]

Reimplemented from FeatureData.

Definition at line 337 of file featuredata.cpp.

References qualityVector, TrapperVector< T >::stlVector(), and SpatialFeatureData::writeXml().

00338 {
00339   SpatialFeatureData::writeXml(stream);
00340   stream<<" trappervector=\"";
00341   for( size_t i = 0; i < qualityVector.stlVector().size(); i++ ) {
00342     stream<<' '<<qualityVector.stlVector()[i];
00343   }
00344   stream<<"\"/>\n";
00345 }

FeatureGui* QualityData::makeGui (  )  [inline, protected, virtual]

Implements FeatureData.

Definition at line 219 of file featuredata.h.

00219 { return new QualityGui(this); }

FeatureInfo* QualityData::makeInfo (  )  [inline, protected, virtual]

Implements FeatureData.

Definition at line 220 of file featuredata.h.

00220 { return new QualityInfo(this); }

std::string QualityData::uniqueName (  )  [inline, virtual]

Specifies a name that uniquely should identify this class. It will be used for lookups in the GeneralMaker class.

Implements GeneralData.

Definition at line 182 of file spatialfeaturedata.h.

00183   {
00184     return std::string("QualityData");
00185   }

int QualityData::quality ( int  pos  )  [inline]

Definition at line 189 of file spatialfeaturedata.h.

References qualityVector, and TrapperVector< T >::stlVector().

00189 { return qualityVector.stlVector()[pos]; }

void QualityData::readStream ( QDataStream &  str  )  [virtual]

Loads the state of this object from a byte stream. Or in other words reads and unserializes a byte stream to set the values of this class object. This method is used for loading a GeneralData object from Berkeley Db.

Reimplemented from FeatureData.

void QualityData::writeStream ( QDataStream &  str  )  [virtual]

Saves the state of this object to a byte stream. Or in other words serializes and writes the internal data held in this class object to a byte stream. This method is used for storing a GeneralData object into Berkeley Db.

Reimplemented from FeatureData.

void QualityData::writeDom ( QDomElement &  elem  )  [virtual]

Saves the state of this object to a dom tree. Or in other words writes out the internal data held in this class to a dom tree underneath the QDomElement elem. This method is used for exporting.

Reimplemented from GeneralData.

void QualityData::readDom ( QDomElement &  elem  )  [virtual]

Loads the state of this object from a dom tree. Or in other words reads in the values of the data members of this class from a dom tree underneath the QDomElement elem. This method is used for importing.

Reimplemented from GeneralData.

void QualityData::readAttributes ( const QXmlAttributes &  attr  )  [virtual]

Loads the state of this object from QXmlAttributes.This method is used for importing.

Reimplemented from FeatureData.

void QualityData::writeXml ( ostream &  stream  )  [virtual]

Reimplemented from FeatureData.

FeatureGui* QualityData::makeGui (  )  [inline, protected, virtual]

Implements FeatureData.

Definition at line 200 of file spatialfeaturedata.h.

00200 { return new QualityGui(this); }

FeatureInfo* QualityData::makeInfo (  )  [inline, protected, virtual]

Implements FeatureData.

Definition at line 201 of file spatialfeaturedata.h.

00201 { return new QualityInfo(this); }

Member Data Documentation

TrapperVector<Q_UINT32> QualityData::qualityVector

Definition at line 216 of file featuredata.h.

Referenced by QualityInfo::myInfoPos(), quality(), readAttributes(), readDom(), readStream(), writeDom(), writeStream(), and writeXml().

TrapperVector<Q_UINT32> QualityData::qualityVector

Definition at line 197 of file spatialfeaturedata.h.

The documentation for this class was generated from the following files:
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