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• accept() : LayerEditDlg , ModeEditDlg , ShowModesDlg
• add() : ShowModesDlg , Item , LayerItem , ModeItem , RootItem
• addAlgorithm() : TrapperDoc
• addView() : TrapperDoc
• Algo() : Algo
• algoIsPopup() : AlgoMakerTP< MoveAlgo, moveAlgo, movePopsup > , AlgoMakerTP< OptimizeLayoutAlgo, optimAlgo, optimPopsup > , AlgoMakerTP< StrandsAlgo, strandsAlgo, strandPopsup > , AlgoMaker , AlgoMakerTP< FindMatesAlgo, findMatesAlgo, findMatesPopsup > , AlgoMakerTP< AlgoType, algoName, algoShouldPopup > , AlgoMakerTP< FindTaginfoAlgo, findTaginfoAlgo, findTaginfoPopsup >
• AlgoMaker() : AlgoMakerTP< MoveAlgo, moveAlgo, movePopsup > , AlgoMakerTP< OptimizeLayoutAlgo, optimAlgo, optimPopsup > , AlgoMakerTP< StrandsAlgo, strandsAlgo, strandPopsup > , AlgoMaker , AlgoMakerTP< FindMatesAlgo, findMatesAlgo, findMatesPopsup > , AlgoMakerTP< FindTaginfoAlgo, findTaginfoAlgo, findTaginfoPopsup >
• AlgoMakerTP() : AlgoMakerTP< MoveAlgo, moveAlgo, movePopsup > , AlgoMakerTP< OptimizeLayoutAlgo, optimAlgo, optimPopsup > , AlgoMakerTP< AlgoType, algoName, algoShouldPopup > , AlgoMakerTP< FindMatesAlgo, findMatesAlgo, findMatesPopsup > , AlgoMakerTP< StrandsAlgo, strandsAlgo, strandPopsup > , AlgoMakerTP< FindTaginfoAlgo, findTaginfoAlgo, findTaginfoPopsup >
• AlgoMoveParam() : AlgoMoveParam
• algosRegistered() : AlgoMakerTP< OptimizeLayoutAlgo, optimAlgo, optimPopsup > , AlgoMakerTP< MoveAlgo, moveAlgo, movePopsup > , AlgoMakerTP< StrandsAlgo, strandsAlgo, strandPopsup > , AlgoMaker , AlgoMakerTP< FindMatesAlgo, findMatesAlgo, findMatesPopsup > , AlgoMakerTP< FindTaginfoAlgo, findTaginfoAlgo, findTaginfoPopsup >
• all_readnames() : TrapperDoc
• answer() : SecondaryIterator< TagData > , SecondaryIterator< ReadData > , PrimaryIterator< ReadData > , SecondaryIterator< ReadMetaData > , SecondaryIterator< DnaStrData > , SecondaryIterator< ReadData > int , SecondaryIterator< FeatureData > , Database::SecondaryIterator< T > , SecondaryIterator< ChromatData > , SecondaryIterator< SpatialFeatureData > , Database::PrimaryIterator< T >

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