dnp_types.h

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#ifndef TRAPPER_DNP_TYPES_H
#define TRAPPER_DNP_TYPES_H
#include <iostream>

int dnp_type( char dnp, char cons )
{
  if ( cons == '-') {
    return 12;
  }
  else if ( dnp == '-') {
    return 13;
  }
  else if ( dnp == 'a' ) {
    if ( cons == 't' ) {
      return 0;
    }
    else if ( cons == 'g' ) {
      return 1;
    }
    else if ( cons == 'c' ) { 
      return 2;     
    }
    else {
      std::cerr<<"Problem in dnp_type(), returning -1"<<endl;
      return -1;
    }
    
    
  }
  else if ( dnp == 't' ) {
    if ( cons == 'a' ) {
      return 6;
    }
    else if ( cons == 'g' ) {
      return 3;      
    }
    else if ( cons == 'c' ) {
      return 4;      
    }
    else {
      std::cerr<<"Problem in dnp_type(), returning -1"<<endl;
      return -1;
    }
    
  }
  else if ( dnp == 'g' ) {
    if ( cons == 't' ) {
      return 9;      
    }
    else if ( cons == 'a' ) {
      return 7;
    }
    else if ( cons == 'c' ) {
      return 5;      
    }
    else {
      std::cerr<<"Problem in dnp_type(), returning -1"<<endl;
      return -1;
    }
    
  }
  else if ( dnp == 'c' ) {
    if ( cons == 't' ) {
      return 10;      
    }
    else if ( cons == 'g' ) {
      return 11;      
    }
    else if ( cons == 'a' ) {
      return 8;
    }
    else {
      std::cerr<<"Problem in dnp_type(), returning -1"<<endl;
      return -1;
    }
    
  }
  else {
    std::cerr<<"Problem in dnp_type(), returning -1"<<endl;
    return -1;
  }
  

}


#endif //TRAPPER_DNP_TYPES_H

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