StrandsAlgo Class Reference

#include <strandsalgo.h>

Inheritance diagram for StrandsAlgo:

[legend]Collaboration diagram for StrandsAlgo:

[legend]List of all members.

Public Member Functions
	StrandsAlgo (TrapperDoc *pDoc_, std::set< db_recno_t > &recnoList, AlgoParam *param)
void	start ()

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Detailed Description

Definition at line 6 of file strandsalgo.h.

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Constructor & Destructor Documentation

StrandsAlgo::StrandsAlgo	(	TrapperDoc *	pDoc_,
		std::set< db_recno_t > &	recnoList,
		AlgoParam *	param
	)			[inline]

Definition at line 9 of file strandsalgo.h.

                                                                                     : 
    RAlgo(pDoc_, recnoList, param) {}

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Member Function Documentation

void StrandsAlgo::start

(

)

[virtual]

Implements RAlgo.

Definition at line 7 of file strandsalgo.cc.

References MAl_Readonly::get_num_seq(), QInputDialog::getItem(), RAlgo::getMAl(), and MAl_Readonly::select_read().

{
  QStringList lst;
  lst << "Normal" << "Reverse";
  bool ok;
  
  QString res = QInputDialog::getItem ( "Select reads on strand", 
                                        "Select strand, normal or reverse", 
                                        lst, 
                                        0, FALSE, 
                                        &ok, 0, 0 );
  
  if ( !ok ) return;
  
  string strand;
  
  if ( res == "Normal" ) {
    strand = "U";
  }
  else {
    strand = "C";
  }
  
  
  for( size_t i = 0; i < getMAl()->get_num_seq(); i++ ) {
    
    if ( getMAl()->get_strand(i) != strand ) {
      getMAl()->select_read(i, false);
    }
  }
}

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The documentation for this class was generated from the following files:

• strandsalgo.h
• strandsalgo.cc

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